Cros Strain Pseudogene Orthology
The orthology pairs are listed with the corresponding chromosomal localization in their respective strains.

- File format: ChrStrain1 StratStrain1 EndStrain1 StrandStrain1 IDStrain1 ChrStrain2 StratStrain2 EndStrain2 StrandStrain2 IDStrain2

129S1/SvImJ
List		 AKR/J
List		 A/J
List		 BALB/cJ
List		 C3H/HeJ
List		 C57BL/6NJ
List
Caroli/EiJ
List		 CAST/EiJ
List		 CBA/J
List		 DBA/2J
List		 FVB/NJ
List		 LP/J
List
NOD/ShiLtJ
List		 NZO/HlLtJ
List		 Pahari/EiJ
List		 PWK/PhJ
List		 SPRET/EiJ
List		 WSB/EiJ
List

Pseudogene Haplotype Annotation
Coordinates of overlaps between pseudogene sequences and annotated haplotype regions in each strain.

- File format: ChrPg StratPg EndPg PgStrainID PgUniversalID PgStrand PgRefID PgParent PgLevel PgBiotype PgExons StrainHapChr StrainHapStart StrainHapEnd StrainName StrainHapID StrainHapRegLength

129S1/SvImJ AKR/J BALB/cJ
C3H/H3J DBA/2J FVB/NJ
LP/J NOD/ShiLtJ NZO/HlLtJ

Subspecies Specific Origin Pseudogene Annotation
Coordinates of overlaps between pseudogene sequences and the annotated region of subspecies specific origin (SSO).

- File format: ChrPg StratPg EndPg PgStrainID PgUniversalID PgStrand PgRefID PgParent PgLevel PgBiotype PgExons StrainSSOChr StrainSSOStart StrainSSOEnd StrainName SSOID StrainSSORegLength

129S1/SvImJ AKR/J BALB/cJ
C3H/HeJ CAST/EiJ DBA/2J
FVB/NJ LP/J NOD/ShiLtJ
NZO/HlLtJ PWK/EiJ WSB/EiJ