mouse.pseudogene.org

Genome Mappability Maps

Mappability maps were generate for every mouse strain genome using a window of 75 bases. Uniquely mappable regions are defined of having a score of 1.
The mouse refernece genome mappability map is available here. The uniquely mappable regions are available here.

- File format: chr start end mappability-score.

129S1/SvImJ full unique	AKR/J full unique	A/J full unique	BALB/cJ full unique	C3H/HeJ full unique	C57BL/6NJ full unique
Caroli/EiJ full unique	CAST/EiJ full unique	CBA/J full unique	DBA/2J full unqieu	FVB/NJ full unique	LP/J full unique
NOD/ShiLtJ full unique	NZO/HlLtJ full unique	Pahari/EiJ full unique	PWK/PhJ full unique	SPRET/EiJ full unique	WSB/EiJ full unique